![]() |
This is
an image of mouse chemical-induced
neurons.
Credit: Courtesy of Hongkui Deng.
|
![]() |
This is
an image of human chemical induced
neurons.
Credit: Courtesy of Gang Pei and
Jian
Zhao.
|
![]() |
This is
an image of mouse chemical-induced
neurons.
Credit: Courtesy of Hongkui Deng.
|
![]() |
This is
an image of human chemical induced
neurons.
Credit: Courtesy of Gang Pei and
Jian
Zhao.
|
Posted by ZenMaster at Friday, August 07, 2015
Labels: Alzheimer, Beijing, chemistry, China, differentiation, fibroblast, human, mouse, neurons, reprogramming, research, skin 0 comments
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This is lead author Minghui Liu. Credit: The
Biodesign Institute at Arizona State University. |
Posted by ZenMaster at Wednesday, July 03, 2013
Labels: chemistry, DNA, enzyme, research, sequence, US 0 comments
Groundbreaking discovery moves field closer to therapeutic applications
Friday, 03 December 2010
Scripps Research Institute scientists have made a significant leap forward in the drive to find a way to safely reprogram mature human cells and turn them into stem cells, which can then change into other cell types, such as nerve, heart, and liver cells. The ability to transform fully mature adult cells such as skin cells into stem cells has potentially profound implications for treating many diseases.
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Scripps Research Associate Professor Sheng Ding. |
Posted by ZenMaster at Friday, December 03, 2010
Labels: California, chemistry, iPS, Oct4, regenerative, research, stem cells 0 comments
China Stakes Claim as Global Centre for Scientific Research Thursday, 14 January 2010 Contrary to popular belief, China is doing much more than exporting clothing, toys, electronics, and other popular consumer goods. The country is on a scientific roll, to the point where it could conceivably be regarded as the emerging global centre for scientific research, a new report indicates. It describes an amazing growth in chemical patenting and publishing that could bring new and innovative products to the world market ranging from pharmaceuticals to microchips, according to an article in the current issue of Chemical & Engineering News, (C&EN) ACS' weekly newsmagazine. C&EN Senior Editor Sophie L. Rovner reports that China in 2009 became the world leader in the number of chemistry patent applications published annually. China published 67,000 patent applications in 2009, compared to 52,000 for Japan and 41,000 for the United States. Publication of scientific papers originating in China increased faster than any other nation during the last 10 years. The output of papers with Chinese authors more than quadrupled — from 20,000 papers in 1998 to more than 112,000 in 2008. The publication of U.S. scientific papers rose by barely 30 percent during that period. In achieving this growth, scientists in China are embracing collaborators in the U.S. and other countries. It is becoming increasingly clear that the country is changing the "world map of research," with China conceivably at its centre, the article suggests. This story is available at China Ascendant. ......... ZenMaster
Posted by ZenMaster at Thursday, January 14, 2010
Labels: biotech, chemistry, China, patent, physics, research 0 comments
Biological Reaction Essential to Life Takes 2.3B Years Without Enzyme
Tuesday, 11 November 2008
All biological reactions within human cells depend on enzymes. Their power as catalysts enables biological reactions to occur usually in milliseconds. But how slowly would these reactions proceed spontaneously, in the absence of enzymes – minutes, hours, days? And why even pose the question?
One scientist who studies these issues is Richard Wolfenden, Ph.D., Alumni Distinguished Professor Biochemistry and Biophysics and Chemistry at the University of North Carolina at Chapel Hill. Wolfenden holds posts in both the School of Medicine and in the College of Arts and Sciences and is a member of the National Academy of Sciences.
In 1995, Wolfenden reported that without a particular enzyme, a biological transformation he deemed "absolutely essential" in creating the building blocks of DNA and RNA would take 78 million years.
"Now we've found a reaction that – again, in the absence of an enzyme – is almost 30 times slower than that," Wolfenden said.
"Its half-life – the time it takes for half the substance to be consumed – is 2.3 billion years, about half the age of the Earth. Enzymes can make that reaction happen in milliseconds."
With co-author Charles A. Lewis, Ph.D., a postdoctoral scientist in his lab, Wolfenden published a report of their new findings recently in the online early edition of the Proceedings of the National Academy of Science. The study is also due to appear in the Nov. 11 print edition.
The reaction in question is essential for the biosynthesis of haemoglobin and chlorophyll, Wolfenden noted. But when catalyzed by the enzyme uroporphyrinogen decarboxylase, the rate of chlorophyll and haemoglobin production in cells "is increased by a staggering factor, one that's equivalent to the difference between the diameter of a bacterial cell and the distance from the Earth to the sun."
"This enzyme is essential for both plant and animal life on the planet," Wolfenden said.
"What we're defining here is what evolution had to overcome, that the enzyme is surmounting a tremendous obstacle, a reaction half-life of 2.3 billion years."
Knowing how long reactions would take without enzymes allows biologists to appreciate their evolution as prolific catalysts, Wolfenden said. It also enables scientists to compare enzymes with artificial catalysts produced in the laboratory.
"Without catalysts, there would be no life at all, from microbes to humans," he said.
"It makes you wonder how natural selection operated in such a way as to produce a protein that got off the ground as a primitive catalyst for such an extraordinarily slow reaction."
Experimental methods for observing very slow reactions can also generate important information for rational drug design based on cellular molecular studies.
"Enzymes that do a prodigious job of catalysis are, hands-down, the most sensitive targets for drug development," Wolfenden said.
"The enzymes we study are fascinating because they exceed all other known enzymes in their power as catalysts."
Wolfenden has carried out extensive research on enzyme mechanisms and water affinities of biological compound. His work has also influenced rational drug design, and findings from his laboratory helped spur development of ACE inhibitor drugs, now widely used to treat hypertension and stroke. Research on enzymes as proficient catalysts also led to the design of protease inhibitors that are used to treat HIV infection.
"We've only begun to understand how to speed up reactions with chemical catalysts, and no one has even come within shouting distance of producing, or predicting the magnitude of, their catalytic power," Wolfenden said.
Reference:
Uroporphyrinogen decarboxylation as a benchmark for the catalytic proficiency of enzymes
Charles A. Lewis, Jr. and Richard Wolfenden
PNAS, November 6, 2008, doi: 10.1073/pnas.0809838105
.........
ZenMaster
Posted by ZenMaster at Tuesday, November 11, 2008
Labels: biotech, chemistry, evolution, research, US 0 comments
Scientists Improve iPS Cell Method
Thursday, 06 November 2008
Scientists from the Scripps Research Institute have identified a combination of drugs that can be used to reprogram cells from human tissue to become similar to embryonic stem cells so that they may develop into all the cell types in the body.
The Scripps method, documented in a story published Thursday in the journal Cell Stem Cell, improves upon a process that until now involved using genes and viruses to coax human cells backward down the development pathway until they are pluripotent, meaning they can become many different cell types. One of the genes used, known as Sox2, had previously been regarded as essential for the reprogramming process.
In June, the Scripps team, led by Sheng Ding, associate professor in the Department of Chemistry at The Scripps Research Institute, showed that it could use drugs to create pluripotent cells from the brain cells of mice. This recent Scripps study appears to be the first published showing success with an alternative method for creating human pluripotent cells.
Ding said the work of his team, which included scientists from the Max Planck Institute for Molecular Biomedicine in Germany, could be used to identify other drugs and small molecules that might also be used in the process for different results.
Reference: Induction of Pluripotent Stem Cells from Mouse Embryonic Fibroblasts by Oct4 and Klf4 with Small-Molecule Compounds Yan Shi, Caroline Desponts, Jeong Tae Do, Heung Sik Hahm, Hans R. Schöler and Sheng Ding Cell Stem Cell, Volume 3, Issue 5, 568-574, 6 November 2008, doi:10.1016/j.stem.2008.10.004 See also: Embryo-free Stem Cell Research Gets an Advance CellNEWS - Thursday, 05 June 2008 Scientists Identify Synthetic Compound that Keeps Stem Cells Young CellNEWS - Wednesday, 08 November 2006 ......... ZenMaster
Posted by ZenMaster at Thursday, November 06, 2008
Labels: California, chemistry, iPS, research, stem cells, US 0 comments
Bacteria used as factories to make complex DNA based nanostructures Thursday, 09 October 2008 In the tiny realm of nanotechnology, scientists have used a wide variety of materials to build atomic scale structures. But just as in the construction business, nanotechnology researchers can often be limited by the amount of raw materials. Now, Biodesign Institute at Arizona State University researcher Hao Yan has avoided these pitfalls by using cells as factories to make DNA based nanostructures inside a living cell. Yan specializes in a fast-growing field within nanotechnology — commonly known as structural DNA nanotechnology — that uses the basic chemical units of DNA, abbreviated as C, T, A, or G, to self-fold into a number of different building blocks that can further self-assemble into patterned structures. "This is a good example of artificial nanostructures that can be replicated using the machineries in live cells" said Yan. "Cells are really good at making copies of double stranded DNA and we have used the cell like a copier machine to produce many, many copies of complex DNA nanostructures." DNA nanotechnologists have made some very exciting achievements during the past five to 10 years. Nevertheless, DNA nanotechnology has been limited by the need to chemically synthesize all of the material from scratch. To date, it has strictly been a test tube science, where researchers have developed many toolboxes for making different DNA nanostructures to attach and organize other molecules including nanoparticles and other biomolecules. "If you need to make a single gram of a DNA nanostructure, you need to order one gram of the starting DNA materials. Scientists have previously used chemical methods to copy branched DNA structures, and there has also been significant work in using long-stranded DNA sequences replicated from cells or phage viruses to scaffold short helper DNA sequences to form 2-D or 3-D objects," said Yan, who is a professor in the Department of Chemistry and Biochemistry at ASU. "We have always dreamed of scaling up DNA nanotechnology. One way to scale it up is to use the cellular system because simple DNA can be replicated inside the cell. We wanted to know if the cell's copy machine could tolerate single stranded DNA nanostructures that contain complicated secondary structures." Yan and his fellow researchers, Chenxiang Lin, Sherri Rinker and Yan Liu at ASU and their collaborators Ned Seeman and Xing Wang at New York University, wanted to test the nanoscale manufacturing capabilities of cells. They went back to reproducing the very first branched nanostructure made up of DNA — a cross-shaped, four-arm DNA junction. Another DNA junction structure containing a different crossover topology was also tested. To copy these branched DNA nanostructures inside a living cell, the ASU and NYU research team first shipped the cargo inside a bacterial cell. They cut and pasted the DNA necessary to make these structures into a phagemid, a virus-like particle that infects a bacterial cell. Once inside the cell, the phagemid used the cell just like a photocopier machine to reproduce millions of copies of the DNA. By theoretically starting with just a single phagemid infection, and a single millilitre of cultured cells, Yan found that the cells could churn out trillions of the DNA junction nanostructures. The DNA nanostructures produced in the cells were also found to fold correctly, just like the previously built test tube structures. According to Yan, the results proved the key existence of the DNA nanostructures during the cell's routine DNA replication and division cycles. "When a DNA nanostructure gets replicated, it does exist and can survive the complicated cellular machinery. And it looks like the cell can tolerate this kind of structure and still do its job. It's amazing," Yan said. Yan acknowledges that this is just the first step, but foresees there are many interesting DNA variations to consider next. "The fact that the natural cellular machinery can tolerate artificial DNA objects is quite intriguing, and we don't know what the limit is yet." Yan's group may be able to change and evolve DNA nanostructures and devices using the cellular system and the technology may also open up some possibilities for synthetic biology applications. "I'm very excited about the future of DNA nanotechnology, but there is a lot of work to be done. An interesting research topic to pursue is the interface of DNA nanostructures with live cells; it is full of opportunities," said Yan. The results were published in the early online edition of the Proceedings of the National Academy of Sciences. ......... ZenMaster
Posted by ZenMaster at Thursday, October 09, 2008
Labels: Artificial Life, chemistry, DNA, research, Synthetic Biology, US 0 comments
Zebra fish glowing green and red.
Roger Y. Tsien, Howard Hughes Medical Institute at the University of California, San Diego. Credit: Joe Toreno for HHMI.