Showing posts with label Germany. Show all posts
Showing posts with label Germany. Show all posts

Tuesday, 7 October 2014

Vesicles Influence the Function of Nerve Cells

Neurons react to the transmission activity of exosomes on three fundamental levels
Tuesday, 07 October 2014

The JGU researchers were able to show that
exosomes are absorbed by the nerve cells and
thus help protect these against stress. Credit:
Institute of Molecular Cell Biology. 
Tiny vesicles containing protective substances which they transmit to nerve cells apparently play an important role in the functioning of neurons. As cell biologists at Johannes Gutenberg University Mainz (JGU) have discovered, nerve cells can enlist the aid of mini-vesicles of neighbouring glial cells to defend themselves against stress and other potentially detrimental factors. These vesicles, called exosomes, appear to stimulate the neurons on various levels: they influence electrical stimulus conduction, biochemical signal transfer, and gene regulation. Exosomes are thus multifunctional signal emitters that can have a significant effect in the brain.

Neurons (blue) which have absorbed exosomes
(green) have increased levels of the enzyme
catalase (red), which helps protect them against
peroxides. Credit: Institute of Molecular Cell
Biology, JGU.
The researchers in Mainz already observed in a previous study that oligodendrocytes release exosomes on exposure to neuronal stimuli. These exosomes are absorbed by the neurons and improve neuronal stress tolerance. Oligodendrocytes are a type of glial cell and they form an insulating myelin sheath around the axons of neurons. The exosomes transport protective proteins such as heat shock proteins, glycolytic enzymes, and enzymes that reduce oxidative stress from one cell type to another, but also transmit genetic information in the form of ribonucleic acids.

"As we have now discovered in cell cultures, exosomes seem to have a whole range of functions," explained Dr. Eva-Maria Krämer-Albers. By means of their transmission activity, the small bubbles that are the vesicles not only promote electrical activity in the nerve cells, but also influence them on the biochemical and gene regulatory level.
Cultivated neurons on a multielectrode array
chip: the electrodes register the electrical
impulses of the neurons. Credit: Institute of
Physiology, Mainz University Medical Center.

"The extent of activities of the exosomes is impressive," added Krämer-Albers. The researchers hope that the understanding of these processes will contribute to the development of new strategies for the treatment of neuronal diseases. Their next aim is to uncover how vesicles actually function in the brains of living organisms.

Contact: Dr. Eva-Maria Krämer-Albers

Reference:
Multifaceted effects of oligodendroglial exosomes on neurons: impact on neuronal firing rate, signal transduction and gene regulation
Dominik Fröhlich, Wen Ping Kuo, Carsten Frühbeis, Jyh-Jang Sun, Christoph M. Zehendner, Heiko J. Luhmann, Sheena Pinto, Joern Toedling, Jacqueline Trotter and Eva-Maria Krämer-Albers
Philosophical Transactions of the Royal Society B, 18 August 2014 DOI: 10.1098/rstb.2013.0510
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Thursday, 6 February 2014

Pivotal Role of the Stem Cell Environment during Brain Development

Max Planck researchers explain why iodine deficiency during pregnancy may have disastrous consequences
Thursday, 06 February 2014

Higher mammals, such as humans, have markedly larger brains than other mammals. Scientists from the Max Planck Institute of Molecular Cell Biology and Genetics in Dresden recently discovered a new mechanism governing brain stem cell proliferation. It serves to boost the production of neurons during development, thus causing the enlargement of the cerebral cortex – the part of the brain that enables us humans to speak, think and dream. The surprising discovery made by the Dresden-based researchers: two components in the stem cell environment – the extracellular matrix and thyroid hormones – work together with a protein molecule found on the stem cell surface, a so-called integrin. This likely explains why iodine deficiency in pregnant women has disastrous consequences for the unborn child, affecting its brain development adversely – without iodine, no thyroid hormones are produced.

This image shows stem cells in the cortex of a
mouse embryo (cell nuclei: blue). Credit: MPI
für Molecular Cell Biology and Genetics/

D. Stenzel. 
"Our study highlights this relationship and provides a potential explanation for the condition neurologists refer to as cretinism", says Wieland Huttner, Director at the Max Planck Institute in Dresden. This neurological disorder severely impairs the mental abilities of a person.

In the course of evolution, certain mammals, notably humans, have developed larger brains than others, and therefore more advanced cognitive abilities. Mice, for example, have brains that are around a thousand times smaller than the human one. In their study, which was conducted in cooperation with the Fritz Lipmann Institute in Jena, the researchers in Dresden wanted to identify factors that determine brain development, and understand how larger brains have evolved.

A cosy bed for brain stem cells
Brain neurons are generated from stem cells called basal progenitors that are able to proliferate in humans, but not in mice. In humans, basal progenitors are surrounded by a special environment, a so-called extracellular matrix (ECM), which is produced by the progenitors themselves. Like a cosy bed, it accommodates the proliferating cells. Mice lack such ECM, which means that they generate fewer neurons and have a smaller brain.

The scientists therefore conducted tests to see whether in mice, basal progenitors start to proliferate if a comparable cell environment is simulated.

"We simulated an extracellular matrix for the brain stem cells using a stimulating antibody. This antibody activates an integrin on the cell surface of basal progenitors and thus stimulates their proliferation", explains Denise Stenzel, who headed the experiments.

Because a requirement of thyroid hormones for proper brain development was previously known, the researchers blocked the production of these hormones in pregnant rats to see if their absence would inhibit basal progenitor proliferation in the embryos. Indeed, fewer progenitors and, consequently, neurons were produced, likely explaining the abnormal brain development in the absence of thyroid hormones. When the action of these hormones on the integrin was blocked, the ECM-simulating antibody alone was no longer able to induce basal progenitor proliferation.

A combination of ECM and thyroid hormones thus appears necessary for basal progenitors to proliferate and produce enough neurons for brain development. Human brain stem cells produce the suitable environment naturally.

"That is probably how, in the course of evolution, we humans developed larger brains", says Wieland Huttner, summing up the study.

The research produced another important finding too.

"We were able to explain the role of iodine in embryonic brain development at the cellular level", says Denise Stenzel. Iodine is essential for the production of thyroid hormones, and an iodine deficiency in pregnant women is known to have adverse effects on the brain development of the unborn child.

Contact: Dr. Wieland B. Huttner

Reference:
Integrin αvβ3 and thyroid hormones promote expansion of progenitors in embryonic neocortex 
Stenzel, Denise; Wilsch-Bräuninger, Michaela; Wong, Fong Kuan; Heuer, Heike; Huttner, Wieland B. 
 Development 2014 141:795-806; doi: 10.1242/dev.101907
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Thursday, 23 January 2014

Insulin-producing Beta Cells from Stem Cells

Scientists decipher early molecular mechanisms of differentiation
Thursday, 23 January 2014

Endodermal cells, they form organs such as lung,
liver and pancreas. Credit: IDR, Helmholtz
Zentrum München.
The Wnt/β-catenin signalling pathway and microRNA 335 are instrumental in helping form differentiated progenitor cells from stem cells. These are organized in germ layers and are thus the origin of different tissue types, including the pancreas and its insulin-producing beta cells. With these findings, Helmholtz Zentrum München scientists have discovered key molecular functions of stem cell differentiation which could be used for beta cell replacement therapy in diabetes. The results of the two studies were published in the renowned journal Development.

The findings of the scientists of the Institute of Diabetes and Regeneration Research (IDR) at Helmholtz Zentrum München (HMGU) provide new insights into the molecular regulation of stem cell differentiation. These results reveal important target structures for regenerative therapy approaches to chronic diseases such as diabetes.

During embryonic development, organ-specific cell types are formed from pluripotent stem cells, which can differentiate into all cell types of the human body. The pluripotent cells of the embryo organize themselves at an early stage in germ layers: the endoderm, mesoderm and ectoderm. From these three cell populations different functional tissue cells arise, such as skin cells, muscle cells, and specific organ cells.

Various signalling pathways are important for this germ layer organization, including the Wnt/β-catenin signalling pathway. The cells of the pancreas, such as the beta cells, originate from the endoderm, the germ layer from which the gastrointestinal tract, the liver and the lungs also arise. Professor Heiko Lickert, director of the IDR, in collaboration with Professor Gunnar Schotta of LMU München, showed that the Wnt/β-catenin signalling pathway regulates Sox17, which in turn regulates molecular programs that assign pluripotent cells to the endoderm, thus inducing an initial differentiation of the stem cells.

In another project Professor Lickert and his colleague Professor Fabian Theis, director of the Institute of Computational Biology (ICB) at Helmholtz Zentrum München, discovered an additional mechanism that influences the progenitor cells. miRNA-335, a messenger nucleic acid, regulates the endodermal transcription factors Sox17 and Foxa2 and is essential for the differentiation of cells within this germ layer and their demarcation from the adjacent mesoderm. The concentrations of the transcription factors determine here whether these cells develop into lung, liver or pancreas cells. To achieve these results, the scientists combined their expertise in experimental research with mathematical modelling.

"Our findings represent two key processes of stem cell differentiation," said Lickert.

"With an improved understanding of cell formation we can succeed in generating functional specialized cells from stem cells. These could be used for a variety of therapeutic approaches. In diabetes, we may be able to replace the defective beta cells, but regenerative medicine also offers new therapeutic options for other organ defects and diseases."

Diabetes is characterized by a dysfunction of the insulin-producing beta cells of the pancreas. Regenerative treatment approaches aim to renew or replace these cells. An EU-funded research project ('HumEn'), in which Lickert and his team are participating, shall provide further insights in the field of beta-cell replacement therapy.

The aim of research at Helmholtz Zentrum München, a partner in the German Center for Diabetes Research (DZD), is to develop new approaches for the diagnosis, treatment and prevention of major common diseases such as diabetes mellitus.

Contact: Heiko Lickert

References:
Wnt/β-catenin signalling regulates Sox17 expression and is essential for organizer and endoderm formation in the mouse 
Silvia Engert, Ingo Burtscher, W. Perry Liao, Stanimir Dulev, Gunnar Schotta and Heiko Lickert
Development, 2013, 140:3128-3138, doi:10.1242/dev.088765

miR-335 promotes mesendodermal lineage segregation and shapes a transcription factor gradient in the endoderm
Dapeng Yang, Dominik Lutter, Ingo Burtscher, Lena Uetzmann, Fabian J. Theis, and Heiko Lickert
Development, 2014, 141, 514-525, doi:10.1242/dev.104232
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Saturday, 7 December 2013

Human Stem Cells Predict Efficacy of Alzheimer Drugs

Researchers from the University of Bonn use reprogrammed patient neurons for drug testing
Saturday, 07 December 2013

Once established such neural stem cells can be
used to continuously generate neurons for drug
testing and disease modelling. Depicted is an
immunofluorescence staining where proteins
characteristic of neural stem cells are labelled
with fluorescing antibodies (Nestin in green,
Dach1 in red). Credit: Jerome Mertens/Uni.
Bonn.
Why do certain Alzheimer medications work in animal models but not in clinical trials in humans? A research team from the University of Bonn and the biomedical enterprise LIFE & BRAIN GmbH has been able to show that results of established test methods with animal models and cell lines used up until now can hardly be translated to the processes in the human brain. Drug testing should therefore be conducted with human nerve cells, conclude the scientists. The results are published by Cell Press in the journal Stem Cell Reports.

In the brains of Alzheimer patients, deposits forms that consists essentially of beta-amyloid and are harmful to nerve cells. Scientists are therefore searching for pharmaceutical compounds that prevent the formation of these dangerous aggregates. In animal models, certain non-steroidal anti-inflammatory drugs (NSAIDs) were found to a reduced formation of harmful beta-amyloid variants. Yet, in subsequent clinical studies, these NSAIDs failed to elicit any beneficial effects.

"The reasons for these negative results have remained unclear for a long time", says Prof. Dr. Oliver Brüstle, Director of the Institute for Reconstructive Neurobiology of the University of Bonn and CEO of LIFE & BRAIN GmbH.

"Remarkably, these compounds were never tested directly on the actual target cells – the human neuron", adds lead author Dr. Jerome Mertens of Prof. Brüstle's team, who now works at the Laboratory of Genetics in La Jolla (USA).

This is because, so far, living human neurons have been extremely difficult to obtain. However, with the recent advances in stem cell research it has become possible to derive limitless numbers of brain cells from a small skin biopsy or other adult cell types.

Scientists transform skin cells into nerve cells
Now a research team from the Institute for Reconstructive Neurobiology and the Department of Neurology of the Bonn University Medical Center together with colleagues from the LIFE & BRAIN GmbH and the University of Leuven (Belgium) has obtained such nerve cells from humans. The researchers used skin cells from two patients with a familial form of Alzheimer's Disease to produce so-called induced pluripotent stem cells (iPS cells), by reprogramming the body's cells into a quasi-embryonic stage. They then transformed the resulting so-called "jack-of-all-trades cells" into nerve cells.

Using these human neurons, the scientists tested several compounds in the group of non-steroidal anti-inflammatory drugs. As control, the researchers used nerve cells they had obtained from iPS cells of donors who did not have the disease. Both in the nerve cells obtained from the Alzheimer patients and in the control cells, the NSAIDs that had previously tested positive in the animal models and cell lines typically used for drug screening had practically no effect. The values for the harmful beta-amyloid variants that form the feared aggregates in the brain remained unaffected when the cells were treated with clinically relevant dosages of these compounds.

Metabolic processes in animal models differ from humans
"In order to predict the efficacy of Alzheimer drugs, such tests have to be performed directly on the affected human nerve cells", concludes Prof. Brüstle's colleague Dr. Philipp Koch, who led the study.

Why do NSAIDs decrease the risk of aggregate formation in animal experiments and cell lines but not in human neurons? The scientists explain this with differences in metabolic processes between these different cell types.

"The results are simply not transferable", says Dr. Koch.

The scientists now hope that in the future, testing of potential drugs for the treatment of Alzheimer's disease will be increasingly conducted using neurons obtained from iPS cells of patients.

"The development of a single drug takes an average of ten years", says Prof. Brüstle.

"By using patient-specific nerve cells as a test system, investments by pharmaceutical companies and the tedious search for urgently needed Alzheimer medications could be greatly streamlined".

Contact: Dr. Oliver Brüstle

Reference:
APP Processing in Human Pluripotent Stem Cell-Derived Neurons is Resistant to NSAID-Based Gamma-Secretase Modulation 
Jerome Mertens, Kathrin Stüber, Patrick Wunderlich, Julia Ladewig, Jaideep C. Kesavan, Rik Vandenberghe, Mathieu Vandenbulcke, Philip van Damme, Jochen Walter, Oliver Brüstle, Philipp Koch
Stem Cell Reports, 05 December 2013, DOI: 10.1016/j.stemcr.2013.10.011
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Wednesday, 3 July 2013

Scientists Discover Molecular Communication Network in Human Embryonic Stem Cells

Scientists Discover Molecular Communication Network in Human Embryonic Stem Cells
Wednesday, 03 July 2013

Scientists at A*STAR's Genome Institute of Singapore (GIS) and the Max Planck Institute for Molecular Genetics (MPIMG) in Berlin (Germany) have discovered a molecular network in human embryonic stem cells (hESCs) that integrates cell communication signals to keep the cell in its stem cell state. These findings were reported in the June 2013 issue of Molecular Cell.

This is a 100X magnification of a human 
embryonic stem cell colony. Credit: A*STAR. 
Human embryonic stem cells have the remarkable property that they can form all human cell types. Scientists around the world study these cells to be able to use them for medical applications in the future. Many factors are required for stem cells to keep their special state, amongst others the use of cell communication pathways.

Cell communication is of key importance in multicellular organisms. For example, the coordinated development of tissues in the embryo to become any specific organ requires that cells receive signals and respond accordingly. If there are errors in the signals, the cell will respond differently, possibly leading to diseases such as cancer. The communication signals which are used in hESCs activate a chain of reactions (called the extracellular regulated kinase (ERK) pathway) within each cell, causing the cell to respond by activating genetic information.

Scientists at the GIS and MPIMG studied which genetic information is activated in the cell, and thereby discovered a network for molecular communication in hESCs. They mapped the kinase interactions across the entire genome, and discovered that ERK2, a protein that belongs to the ERK signalling family, targets important sites such as non-coding genes and histones, cell cycle, metabolism and also stem cell-specific genes.

The ERK signalling pathway involves an additional protein, ELK1 which interacts with ERK2 to activate the genetic information. Interestingly, the team also discovered that ELK1 has a second, totally opposite function. At genomic sites which are not targeted by ERK signalling, ELK1 silences genetic information, thereby keeping the cell in its undifferentiated state. The authors propose a model that integrates this bi-directional control to keep the cell in the stem cell state.

These findings are particularly relevant for stem cell research, but they might also help research in other related fields.

First author Dr Jonathan Göke from Stem Cell and Developmental Biology at the GIS said:
"The ERK signalling pathway has been known for many years, but this is the first time we are able to see the full spectrum of the response in the genome of stem cells. We have found many biological processes that are associated with this signalling pathway, but we also found new and unexpected patterns such as this dual mode of ELK1. It will be interesting to see how this communication network changes in other cells, tissues, or in disease."

"A remarkable feature of this study is, how the information was extracted by computational means from the experimental data," said Prof Martin Vingron from MPIMG and co-author of this study.

"This is an important study because it describes the cell's signalling networks and its integration into the general regulatory network. Understanding the biology of embryonic stem cells is a first step to understanding the capabilities and caveats of stem cells in future medical applications," Prof Ng Huck Hui added.

Contact: Winnie Lim

Reference:
Genome-wide Kinase-Chromatin Interactions Reveal the Regulatory Network of ERK Signaling in Human Embryonic Stem Cells
Jonathan Göke, Yun-Shen Chan, Junli Yan, Martin Vingron and Huck-Hui Ng
Molecular Cell, 50(6), 844-855, 27 June 2013, DOI: 10.1016/j.molcel.2013.04.030
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Wednesday, 20 March 2013

Neanderthal Genome III: Entire Neanderthal Genome Decoded

Researchers Publish the First High-Quality Neanderthal Genome

Wednesday, 20 March 2013

The Max Planck Institute for Evolutionary Anthropology, in Leipzig, Germany, has completed the genome sequence of a Neanderthal and makes the entire sequence available to the scientific community today.

Svante Pääbo holding the skull of a 
Neanderthal. Credit: Frank Vinken.
In 2010, Dr. Svante Pääbo and his colleagues presented the first draft version of the Neanderthal genome from data collected from three bones found in a cave in Croatia. They have now used a toe bone excavated in 2010 in Denisova Cave in southern Siberia to generate a high-quality genome from a single Neanderthal individual.

The Leipzig team has used sensitive techniques they have developed over the past two years to sequence every position in the genome about 50 times over, using DNA extracted from 0.038 grams of the toe bone. The analysis of the genome together with partial genome sequences from other Neanderthals, and the genome from a small finger bone discovered in the same cave, shows that the individual is closely related to other Neanderthals in Europe and western Russia. Remarkably, Neanderthals and their relatives, Denisovans, were both present in this unique cave in the Altai Mountains on the border between Russia, China, Mongolia and Kazakhstan.


The figure shows a tree relating this genome
to the genomes of Neanderthals from Croatia,
from Germany and from the Caucasus as well
as the Denisovan genome recovered from a
finger bone excavated at Denisova Cave. It
shows that this individual is closely related to
these other Neanderthals. Thus, both Neanderthals
and Denisovans have inhabited this cave in
southern Siberia, presumably at different times.
Credit: Max Planck Institute for Evolutionary
Anthropology. 
In the 2010 draft version of the Neanderthal genome, each position was determined, on average, once. In the now-completed version of the genome every position was determined on average 50 times over. This allows even the small differences between the copies of genes that this Neanderthal individual inherited from its mother and father to be distinguished. Today, the Leipzig group makes the entire Neanderthal genome sequence available for the scientific community over the internet.

“The genome is of very high quality”, says Dr. Kay Prüfer, who coordinates the analyses of the genome in Leipzig.

“It matches the quality of the Denisovan genome, presented last year, and is as good as or even better than the multiple present-day human genomes available to date.”

“We are in the process of comparing this Neanderthal genome to the Denisovan genome as well as to the draft genomes of other Neanderthals. We will gain insights into many aspects of the history of both Neanderthals and Denisovans and refine our knowledge about the genetic changes that occurred in the genomes of modern humans after they parted ways with the ancestors of Neanderthals and Denisovans” says Dr. Svante Pääbo.

The group will present a paper describing the genome later this year.

“But we make the genome sequence freely available now to allow other scientists to profit from it even before it is published” says Pääbo.

The project is made possible by financing from the Max Planck Society and is part of efforts since almost 30 years by Dr. Pääbo’s group to study ancient DNA. The toe bone was discovered by Professor Anatoly Derevianko and Professor Michael Shunkov from the Russian Academy of Sciences in 2010 during their excavations at Denisova Cave, a unique archaeological site which contains cultural layers indicating that human occupation at the site started up to 280,000 years ago.

Source: Max Planck Institute for Evolutionary Anthropology
Contact: Sandra Jacob
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Wednesday, 13 June 2012

Bonobo Genome Completed

Max Planck scientists have completed the genome of the bonobo -- the final great ape to be sequenced

Wednesday, 13 June 2012

This is Ulindi, the female bonobo 
from which the genome was 
sequenced, in the Leipzig zoo. 
Credit: Michael Seres. 
In a project led by the Max Planck Institute for Evolutionary Anthropology in Leipzig, an international team of scientists has completed the sequencing and analysis of the genome of the last great ape, the bonobo. Bonobos, which together with chimpanzees are the closest living relatives of humans, are known for their peaceful, playful and sexual behaviour that contrasts with the more aggressive behaviour of chimpanzees. The genome sequence provides insights into the evolutionary relationships between the great apes and may help us to understand the genetic basis of these traits.

The genome was sequenced from Ulindi, a female bonobo who lives in the Leipzig zoo. Genome sequences have also been generated from all other great apes – chimpanzee, orang-utan and gorilla - making this the final genome of a great ape to be sequenced and providing insights into their relationships with one another and with humans.

The comparison of the genome sequences of bonobo, chimpanzee, and human show that humans differ by approximately 1.3% from both bonobo and chimpanzee. Chimpanzees and bonobos are more closely related, differing by only 0.4%.

Bonobo and chimpanzee territories in central Africa are close to one another and separated only by the Congo River. It has been hypothesized that the formation of the Congo River separated the ancestors of chimpanzees and bonobos, leading to these distinct apes. Examination of the relationship between bonobos and chimpanzees showed that there appears to have been a clean split and no subsequent interbreeding, which supports this hypothesis.

Despite the fact that on average the genomes of bonobos and chimpanzees are equally distant from human, analysis of the genome sequence of the bonobo revealed that for some particular parts of the genome, humans are closer to bonobos than to chimpanzees, while in other regions the human genome is closer to chimpanzees. Further research will determine whether these regions contribute in any way to the behavioural differences and similarities between humans, chimpanzees, and bonobos.

Contact: Dr. Kay Pruefer

References:
The bonobo genome compared with the chimpanzee and human genomes 
Kay Prüfer, Kasper Munch, Ines Hellmann, Keiko Akagi, Jason R. Miller, Brian Walenz, Sergey Koren, Granger Sutton, Chinnappa Kodira, Roger Winer, James R. Knight, James C. Mullikin, Stephen J. Meader, Chris P. Ponting, Gerton Lunter, Saneyuki Higashino, Asger Hobolth, Julien Dutheil, Emre Karakoç, Can Alkan, Saba Sajjadian, Claudia Rita Catacchio, Mario Ventura, Tomas Marques-Bonet, Evan E. Eichler, Claudine André, Rebeca Atencia, Lawrence Mugisha, Jörg Junhold, Nick Patterson, Michael Siebauer, Jeffrey M. Good, Anne Fischer, Susan E. Ptak, Michael Lachmann, David E. Symer, Thomas Mailund, Mikkel H. Schierup, Aida M. Andrés, Janet Kelso, Svante Pääbo
Nature June 12 2012, DOI: 10.1038/nature11128

Ewen Callaway
Nature News, June 13 2012
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Thursday, 11 November 2010

MicroRNA Controls Mammary Gland Development in Mice

Max Planck researchers discover novel mechanism for vertebrate organ development
Thursday, 11 November 2010

Hormones, growth factors and several proteins ensure that development occurs in the right way, at the right time. The components that cause breast development in mammals, for example, were thought to be largely known. However, as a team of scientists from Göttingen, Frankfurt and Hanover have now discovered, in the case of breast development, hormones and proteins do not account for the full story. The scientists have shown that tiny ribonucleic acid molecules play a key role in this process. The mammary glands of mice lacking the gene for the microRNAs 212 and 132 failed to grow at puberty.

The scientists have demonstrated for the first time in an animal model that small ribonucleic acid molecules, so-called microRNAs, also fulfil an important function in organ development.

"This came as a surprise to us," says project leader Kamal Chowdhury from the Max Planck Institute for Biophysical Chemistry in Göttingen.

"The mice used in our experiments had all of the hormones, growth factors and proteins that ensure normal breast development. But the absence of the microRNAs miR-212 and miR-132 resulted in the complete failure of duct development in the mammary glands of mice."



Mammary gland tissue of milk-producing mice with (left) and without (right) miR-212/132: the consequences of the lack of the ribonucleic acid molecules are clear to see. The milk ducts (dark red) did not grow in the tissue without the microRNAs. Credit: Image: Max Planck Institute for Biophysical Chemistry.


It is well known that microRNAs perform very important regulatory functions inside living cells. Although they do not code for proteins, they are responsible for the fine-tuning of the production of certain proteins and intervene extensively in metabolic processes. The question is however: how does this activity shape the morphology of the whole organism?

"Using various experiments, we were able to demonstrate that this RNA family plays a key role in mammary gland development and we could locate where these molecules presumably intervene on a regulatory basis," explains Chowdhury.

The mammary gland, which is also known as the milk gland, consists of the milk ducts and the surrounding connective tissue, which has a supportive and regulatory function. The connective tissue also appears to be the location where miR-212 and miR-132 are produced and intervene in the developmental process. Chowdhury and his colleague Ahmet Ucar were able to demonstrate with their experiments that this is the only place where the genes for these ribonucleic acid molecules are "switched on" in the breast tissue.

Molecular dimmer
According to the researcher's model, the microRNA molecules appear to control the production of a protein called MMP-9.

"The microRNAs can down-regulate the production of MMP-9, like a dimmer switch," explains Ucar. If the microRNAs are missing, more MMP-9 proteins are produced and they accumulate near the milk ducts. They appear to activate a signalling pathway there, which prevents the normal growth of the milk ducts in the glandular tissue.

"These tiny RNA molecules carry out their regulatory function by influencing the communication between the two tissues of the mammary gland," says Ucar. Other experiments now need to be carried out to examine whether these microRNAs also regulate breast development in humans. At the moment, the scientists can only speculate about what happens when the microRNAs do not function correctly.

"Whether such malfunctions can lead to the formation of tumours, for example, is something that needs to be examined in further studies," says Chowdhury.

Source: Max-Planck-Gesellschaft
Contact: Kamal Chowdhury

Reference:
miR-212 and miR-132 are required for epithelial stromal interactions and mouse mammary gland development
Ahmet Ucar, Vida Vafaizadeh, Hubertus Jarry, Jan Fiedler, Petra A B Klemmt, Thomas Thum, Bernd Groner, and Kamal Chowdhury
Nature Genetics, advanced online publication, November 7, 2010
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ZenMaster

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Tuesday, 26 October 2010

How Genes are Selectively Silenced

How Genes are Selectively Silenced
Monday, 25 October 2010

Our genetic material is often compared to a book. However, it is not so much like a novel to be read in one piece, but rather like a cookbook. The cell reads only those recipes which are to be cooked at the moment. The recipes are the genes; 'reading' in the book of the cell means creating RNA copies of individual genes, which will then be translated into proteins.

The cell uses highly complex, sophisticated regulatory mechanisms to make sure that not all genes are read at the same time. Particular gene switches need to be activated and, in addition, there are particular chemical labels in the DNA determining which genes are transcribed into RNA and which others will be inaccessible, i.e. where the book literally remains closed. The biological term for this is epigenetic gene regulation.

Among the epigenetic mechanisms, which are well studied, is the silencing of genes by methyl groups. This is done by specialized enzymes called methyltransferases, which attach methyl labels to particular 'letters' of a gene whereby access to the whole gene is blocked.

"One of the great mysteries of modern molecular biology is: How do methyltransferases know where to attach their labels in order to selectively inactivate an individual gene?" says Professor Ingrid Grummt of the German Cancer Research Center (DKFZ).

Grummt has now come much closer towards unravelling this mystery. She has focused on studying those text passages in the genetic material, which do not contain any recipes. Nevertheless, these texts are transcribed into RNA molecules in a controlled manner.

"These so-called noncoding RNAs do not contain recipes for proteins. They are important regulators in the cell which we are just beginning to understand," says Ingrid Grummt.

In her most recent work, Grummt and her co-workers have shown for the first time that epigenetic regulation and regulation by noncoding RNAs interact. The scientists artificially introduced a noncoding RNA molecule called pRNA into cells. As a result, methyl labels are attached to a particular gene switch so that the genes behind it are not read. The trick is that pRNA exactly matches (is complementary to) the DNA sequence of this gene switch. The investigators found out that pRNA forms a kind of plait, or triple helix, with the two DNA strands in the area of this gene switch. Methyltransferases, in turn, are able to specifically dock to this 'plait' and are thus directed exactly to the place where a gene is to be blocked.

More than half of our genetic material is transcribed into noncoding RNA. This prompts Ingrid Grummt to speculate:

"It is very well possible that there are exactly matching noncoding RNA molecules for all genes that are temporarily silenced. This would explain how such a large number of genes can be selectively turned on and off."

Source: Helmholtz Association of German Research Centres
Contact: Dr. Sibylle Kohlstädt

Reference:
Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes
Kerstin-Maike Schmitz, Christine Mayer, Anna Postepska and Ingrid Grummt
Genes & Development 2010, DOI: 10.1101/gad.590910
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Tuesday, 9 March 2010

Mouse Embryonic Stem Cells: A Deceptive Model

Stem cells of humans and mice differ more strongly than scientists had suspected. New study calls research factors into question Tuesday, 09 March 2010 For years, scientists have puzzled over to what extent the findings of studies on the embryonic stem cells (ES cells) of mice are transferable to humans. It is certainly true that human and mouse ES cells are both pluripotent. That means they are capable of forming any of the body's cell types, numbering more than 200 in all. Moreover, both types of cells have an active Oct4 transcription factor, for example. This is the gene that is essential for maintaining pluripotency, and is what makes egg cells, as well as embryonic stem cells and early embryos, potentially immortal. In other aspects, though, as scientists have known for some time now, human and mouse ES cells differ enormously. Certain signalling substances that can be used to turn mouse cells into liver, nerve or muscle cells, for instance, produce either no effect or totally different effects in human ES cells. The reasons for this are still uncertain. However, in 2007 two research teams succeeded in isolating a promising new type of pluripotent cells from mice embryos (see Brons et al., Nature 448, 2007). Known as epiblast stem cells (EpiSC), these cells are also pluripotent. However, they stem from a later stage of embryonic development: unlike 'traditional' ES cells, which are harvested from a few-days-old embryo in the blastocyst stage, these are harvested from an embryo that has just lodged itself in the uterus and which is referred to as an epiblast. The astonishing thing about it is that although epiblast stem cells are actually a step ahead in their development, they appear to be more similar to human ES cells than 'classic' mouse ES cells are. For example, both epiblast stem cells and human ES cells can, with the addition of a certain hormone, the FGF2 growth factor, be grown and held in a state in which they can turn into any tissue at all. "Epiblast stem cells from mice are therefore more-or-less equated with human ES cells in the general scientific discussion," says Boris Greber, the lead author of the study. Differing effects of signal molecules But Greber, a biochemist, wanted to know more. In their latest study, he and his fellow scientists therefore looked at how mouse epiblast and human embryonic stem cells react to different growth factors and inhibitors - and they found that the two types of cells do, in fact, differ on a crucial point. Whereas the FGF growth factor actively supports the self-renewal of human ES cells, this is not the case with mouse epiblast cells. "Ultimately, what this means is that many preliminary tests on animal cells – particularly in medically relevant projects – may not only be useless, but the findings from this kind of early testing may even be misleading," explains Hans Schöler. He goes on to say that human ES cells will therefore continue to be absolutely essential for stem cell research in the future. "The recent successes in reprogramming mature human somatic cells sometimes make it look as though tests using human ES cells are nowadays redundant. But appearances are deceptive." Neither the technologies for reprogramming nor those for purposefully differentiating cells are as yet fully-developed. Human stem cells remain indispensable Only a fraction of the cells that the scientists treat with their formulas goes on to display the right attributes. And only through elaborate, time-consuming tests can the successfully transformed cells be picked out from among the large numbers of cells that failed to be completely reprogrammed. "Our latest study demonstrates that animal model systems are inadequate for a great many tests of this kind," says Schöler. "Particularly when we're talking about developing safe and effective stem cell therapies, we will still need human ES cells as the gold standard against which to compare everything else. In such cases, lengthy preliminary testing on animal cells risks wasting valuable time and resources." ......... ZenMaster


For more on stem cells and cloning, go to CellNEWS at http://cellnews-blog.blogspot.com/

Wednesday, 1 July 2009

Neural Stem Cell Differentiation Factor Discovered

Why neural stem cells divide and differentiate Wednesday, 01 July 2009 Neural stem cells represent the cellular backup of our brain. These cells are capable of self-renewal to form new stem cells or differentiate into neurons, astrocytes or oligodendrocytes. Astrocytes have supportive functions in the environment of neurons, while oligodendrocytes form the myelin layer around axons in order to accelerate neuronal signal transmission. But how does a neural stem cell “know” which way it is supposed to develop? On the molecular level receptors of the Notch family play a significant role in this process. So far, only stimulating extracellular ligands of Notch receptors had been described. Biochemists of Goethe University Medical School now describe a long time assumed but not yet identified soluble Notch inhibitor. Frankfurt scientists led by Mirko Schmidt and Ivan Dikic reported in the renowned journal “Nature Cell Biology” that the secreted protein EGFL7 (Epidermal Growth Factor-like domain 7) is such an inhibitory factor. EGFL7 had already been known from its involvement in the development of blood vessels. “It was a surprise when we discovered that EGFL7 bound the extracellular domains of Notch receptors and competed with known Notch ligands" explains Ivan Dikic from the Institute of Biochemistry and CEF Institute in Frankfurt. Researchers analyzed the antagonistic effects of EGFL7 in adult neural stem cells. The self-renewal potential of these cells depends on an intact interaction of the ligand Jagged1 and its receptor Notch1. Addition of EGFL7 blocked the essential interaction and reduced the division of neural stem cells. At the same time, EGFL7 stimulated the differentiation of neural stem cells into neurons. “It has been well defined that Notch signalling drives the formation of astrocytes from neural stem cells while it suppresses the formation of neurons and the maturation of oligodendrocytes" explains Mirko Schmidt at the Institute of Neurology. Inhibition of Notch signalling reverses the situation and more neural stem cells differentiate into neurons. This is exactly what happened upon the addition of EGFL7. In order to verify their findings in vivo, the researchers analyzed mouse brains and identified mature neurons as a source of EGFL7 in the adult brain. The distribution of these cells in the brain was biologically significant, as EGFL7 was absent from regions with high amounts of neural stem cells, e.g. the sub-ventricular zone. “This way EGFL7 may promote the formation of new neurons" suggests Schmidt. The findings of Schmidt and Dikic offer a plethora of medical applications. Maturation of adult stem or precursor cells is significant for the development of multiple tissues, e.g. in the central nerve system or in the heart. Moreover, cancer stem cells have been described, which are important for the formation of tumours, especially in the human brain. EGFL7 might also be applied as a neuronal differentiation factor in ischemic insults or neurodegenerative diseases such as Alzheimer or Parkinson predict both researchers. Future work will unravel in which diseases EGFL7 can unfold its therapeutic potential. Reference: Epidermal growth factor-like domain 7 (EGFL7) modulates Notch signalling and affects neural stem cell renewal Mirko H.H. Schmidt, Frank Bicker, Iva Nikolic, Jeannette Meister, Tanja Babuke, Srdjan Picuric, Werner Müller-Esterl, Karl H. Plate & Ivan Dikic Nature Cell Biology, 7 June 2009, doi:10.1038/ncb1896 ......... ZenMaster


For more on stem cells and cloning, go to CellNEWS at http://cellnews-blog.blogspot.com/ and http://www.geocities.com/giantfideli/index.html

Thursday, 25 June 2009

Artificial Liver for Drug Tests

Artificial Liver for Drug Tests Thursday, 25 June 2009 If you have hay fever, headaches or a cold, it's only a short way to the nearest chemist. The drugs, on the other hand, can take eight to ten years to develop. Until now animal experiments have been an essential step, yet they continue to raise ethical issues. Dr. Johanna Schanz and Prof. Heike Mertsching (f.l.t.r.) work to develop an artificial liver. Credit: Fraunhofer/Dirk Mahler."Our artificial organ systems are aimed at offering an alternative to animal experiments," says Professor Heike Mertsching of the Fraunhofer Institute for Interfacial Engineering and Biotechnology IGB in Stuttgart. "Particularly as humans and animals have different metabolisms. 30 per cent of all side effects come to light in clinical trials." The test system, which Professor Mertsching has developed jointly with Dr. Johanna Schanz, should in future give pharmaceutical companies greater security and shorten the path to new drugs. Both researchers received the "Human-centered Technology" prize for their work. "The special feature, in our liver model for example, is a functioning system of blood vessels," says Dr. Schanz. "This creates a natural environment for cells." Traditional models do not have this, and the cells become inactive. "We don't build artificial blood vessels for this, but use existing ones – from a piece of pig's intestine." All of the pig cells are removed, but the blood vessels are preserved. Human cells are then seeded onto this structure – hepatocytes, which, as in the body, are responsible for transforming and breaking down drugs, and endothelial cells, which act as a barrier between blood and tissue cells. In order to simulate blood and circulation, the researchers put the model into a computer-controlled bioreactor with flexible tube pump, developed by the IGB. This enables the nutrient solution to be fed in and carried away in the same way as in veins and arteries in humans. "The cells were active for up to three weeks," says Dr. Schanz. "This time was sufficient to analyze and evaluate the functions. A longer period of activity is possible, however." The researchers established that the cells work in a similar way to those in the body. They detoxify, break down drugs and build up proteins. These are important pre-conditions for drug tests or transplants, as the effect of a substance can change when transformed or broken down – many drugs are only metabolized into their therapeutic active form in the liver, while others can develop poisonous substances. The researchers have demonstrated the basic possibilities for use of the tissue models – liver, skin, intestine and windpipe. At the moment, the test system is being examined. Within two years it could provide a safer alternative to animal experiments. ......... ZenMaster


For more on stem cells and cloning, go to CellNEWS at http://cellnews-blog.blogspot.com/ and http://www.geocities.com/giantfideli/index.html